INNER CODE UNIT · Shell

top_assemblies_rank

pirovc/genome_updater · genome_updater.sh:1393

        top_assemblies_rank=${top_assemblies%:*}
        top_assemblies_num=${top_assemblies#*:}
    fi
fi

IFS=","
if [[ -n "${refseq_category}" ]]; then
    valid_refseq_category=("reference genome" "na")
    for rc in ${refseq_category}; do
        # grep -i ignore case
        if ! printf '%s\n' "${valid_refseq_category[@]}" | grep -Fxqi -- "${rc}"; then
            echo "${rc}: invalid refseq category [ $(printf "'%s' " "${valid_refseq_category[@]}")]"
            exit 1
        fi
    done
fi
if [[ -n "${assembly_level}" ]]; then
    valid_assembly_level=("complete genome" "chromosome" "scaffold" "contig")

View source record →