INNER CODE UNIT · Shell

timestamp

pirovc/genome_updater · genome_updater.sh:1473

timestamp=$(date +%Y-%m-%d_%H-%M-%S)                                                       # timestamp of the run
export check_md5 check_gz silent silent_progress n_formats timestamp verbose_log link_mode # To be accessible in functions called by parallel

# Create working directory
if [[ -z "${working_dir}" ]]; then
    working_dir=$(mktemp -d -p .) # default
else
    mkdir -p "${working_dir}" #user input
fi
working_dir="$(readlink -m "${working_dir}")/"
files_dir="files/"
export files_dir working_dir dir_structure

default_assembly_summary=${working_dir}assembly_summary.txt
history_file=${working_dir}history.tsv

# set MODE
if [[ "${just_fix}" -eq 1 ]]; then

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