INNER CODE UNIT · Shell

c

pirovc/genome_updater · genome_updater.sh:1166

        c=$((c + 1))
    done
else
    # parse command line arguments by default
    declare -a "args=($(printf "%q " "$@"))"
fi

declare -A new_args
bool_args=""
OPTIND=1 # Reset getopts
while getopts "${getopts_list}" opt "${args[@]}"; do
    case ${opt} in
    a) download_taxonomy=1 ;;
    A) top_assemblies=${OPTARG} ;;
    b) label=${OPTARG} ;;
    B) rollback_label=${OPTARG} ;;
    c) refseq_category=${OPTARG} ;;
    d) database=${OPTARG} ;;

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