INNER CODE UNIT · Python

main

wwood/singlem · singlem/main.py:369

def main():
    bird_argparser = BirdArgparser(
        program='SingleM',
        authors=[
            BEN_NAME_AND_CENTRE,
            "Samuel Aroney, "+CMR,
            "Raphael Eisenhofer, Centre for Evolutionary Hologenomics, University of Copenhagen, Denmark",
            "Rossen Zhao, "+CMR],
        version=singlem.__version__,
        raw_format=True,
        examples={'pipe': [
            Example(
                'Get a taxonomic profile from paired read input:',
                'singlem pipe -1 <fastq_or_fasta1> -2 <fastq_or_fasta2> -p <output.profile.tsv>'),
            Example(
                'Get a taxonomic profile Krona diagram from single read input (long or short read):',
                'singlem pipe -1 <fastq_or_fasta> --taxonomic-profile-krona <output.profile.html>'),
            Example(

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