INNER CODE UNIT · Python

add_dendrogram

widdowquinn/pyani · pyani/pyani_graphics/mpl/__init__.py:84

def add_dendrogram(dfr, fig, params, heatmap_gs, orientation="col"):
    """Return a dendrogram and corresponding gridspec, attached to the fig.

    :param dfr:  Pandas DataFrame describing input data
    :param fig:  matplotlib Fig that holds graphical output
    :param params:  pyani_graphics.Params object
    :param heatmap_gs:  matplotlib GridSpec for this dendrogram
    :param orientation:  str, "row" or "col"

    Modifies the fig in-place. Orientation is either 'row' or 'col' and
    determines location and orientation of the rendered dendrogram.

    We expect that the row/column index values should be ordered
    identically. If they are not, the dendrogram will not match labels
    """
    # Row or column axes?
    if orientation == "row":
        dists = distance.pdist(dfr)

View source record →