INNER CODE UNIT · Python

max_cluster

wheaton5/souporcell · consensus.py:186

max_cluster = -1
total_cells = 0
cell_size = {}
with open(args.clusters) as assignments:
    assignments.readline()
    for (index, line) in enumerate(assignments):
        if index in doublets:
            continue
        tokens = line.strip().split()
        cell = tokens[0]
        #    doublets.add(index)
        #    continue
        total_cells += 1
        cluster = int(tokens[2])
        cell_clusters[index] = cluster
        cluster_cells.setdefault(cluster,[])
        cluster_cells[cluster].append(index)
        max_cluster = max(max_cluster,cluster)

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