INNER CODE UNIT · Python

cluster_counts

wheaton5/souporcell · consensus.py:205

cluster_counts = [0]*(max_cluster+1)
for (cell, cluster) in cell_clusters.items():
    cluster_counts[cluster] += 1
cell_index = {}
total_lost = 0
loci_counts = {}
loci_full_counts = {}
cell_counts = {}

with open(args.ref_matrix) as ref:
    with open(args.alt_matrix) as alt:
        alt.readline()
        alt.readline()
        tokens = alt.readline().strip().split()
        cells = int(tokens[1])
        total_loci = int(tokens[0])
        ref.readline()
        ref.readline()

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