INNER CODE UNIT · Python

neg_log_3

wheaton5/souporcell · compile_stan_model.py:24

    neg_log_3 = -log(ploidy+1);
    tp_prior = log(0.9);
    fp_prior = log(0.1);
    logp_base_correct = log(0.99);
}

parameters {
    real<lower=0.0, upper=1.0> p_soup;
}

model {
    real stuff[ploidy+1];
    real p_hom_ref;
    real p_hom_alt;
    real p_het_ref;
    real truth;
    real p_err;
    real err;

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