INNER CODE UNIT · Python

run_test

veg/hyphy · Testing/pairwise_test.py:27

def run_test(params):
    bl, mod, rv, rvm, dist, lf = params
    
    cmd = [
        "hyphy", "res/TemplateBatchFiles/dNdSRateAnalysis.bf",
        "--alignment", "tests/data/bglobin.nex",
        "--use-tree", "Yes",
        "--code", "Universal",
        "--branch-lengths", bl,
        "--model", mod,
        "--rate-variation", rv,
        "--rate-variation-models", rvm,
        "--distribution", dist,
        "--initial-values", "Default",
        "--syn-classes", "2",
        "--nsyn-classes", "2",
        "--lineage-filter", lf
    ]

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