INNER CODE UNIT · Python

run_vcf

tskit-dev/tskit · python/tskit/cli.py:128

def run_vcf(args):
    tree_sequence = load_tree_sequence(args.tree_sequence)
    tree_sequence.write_vcf(
        sys.stdout,
        ploidy=args.ploidy,
        contig_id=args.contig_id,
        allow_position_zero=args.allow_position_zero,
    )


def add_tree_sequence_argument(parser):
    parser.add_argument(
        "tree_sequence",
        help="The tskit tree sequence file. If not provided, read from stdin.",
        default=None,
        nargs="?",
    )

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