INNER CODE UNIT · Python

run_trees

tskit-dev/tskit · python/tskit/cli.py:60

def run_trees(args):
    ts = load_tree_sequence(args.tree_sequence)
    for tree in ts.trees():
        print(f"tree {tree.index}:")
        print(f"  num_sites: {tree.num_sites}")
        print(
            "  interval:  ({0:.{2}f}, {1:.{2}f})".format(
                tree.interval.left, tree.interval.right, args.precision
            )
        )
        if args.draw:
            print(tree.draw(format="unicode"))


def run_individuals(args):
    tree_sequence = load_tree_sequence(args.tree_sequence)
    tree_sequence.dump_text(individuals=sys.stdout, precision=args.precision)

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