INNER CODE UNIT · Python

run_provenances

tskit-dev/tskit · python/tskit/cli.py:109

def run_provenances(args):
    tree_sequence = load_tree_sequence(args.tree_sequence)
    if args.human:
        for provenance in tree_sequence.provenances():
            d = json.loads(provenance.record)
            print(
                "id={}, timestamp={}, record={}".format(
                    provenance.id, provenance.timestamp, json.dumps(d, indent=4)
                )
            )
    else:
        tree_sequence.dump_text(provenances=sys.stdout)


def run_fasta(args):
    tree_sequence = load_tree_sequence(args.tree_sequence)
    tree_sequence.write_fasta(sys.stdout, wrap_width=args.wrap)

View source record →