INNER CODE UNIT · C++

listlen

torognes/swarm · src/algo.cpp:631

      auto const listlen = amplicons - first;
      qgram_differ.fast_over_pool(subseed.ampliconid,
                                  make_view(amps_v).subview(first, listlen),
                                  workspace.qgram_diffs(listlen));
      for (auto i = 0ULL; i < listlen; ++i) {
        if (workspace.qgramdiffs_v[i] <= parameters.opt_differences) {
          workspace.targetindices[targetcount] = first + i;
          workspace.targetampliconids[targetcount] = amps_v[first + i].ampliconid;
          ++targetcount;
        }
      }
    }

    return targetcount;
  }


  auto grow_cluster_from_subseeds(struct Parameters const & parameters,

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