INNER CODE UNIT · Python

main

torognes/swarm · scripts/graph_plot.py:192

def main():
    """
    Backbone of the script
    """
    # Parse command line options.
    swarms, internal_structure, cluster, drop = option_parse()

    # Output file
    basename = os.path.splitext(swarms)[0]
    output_pdf = basename + "_cluster_" + str(cluster) + ".pdf"
    # output_svg = basename + "_cluster_" + str(cluster) + ".svg"
    output_graphml = basename + "_cluster_" + str(cluster) + ".graphml"

    # Collect data
    amplicons, relations = parse_files(swarms,
                                       internal_structure,
                                       cluster,
                                       drop)

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