INNER CODE UNIT · Python

build_graph

torognes/swarm · scripts/graph_plot.py:144

def build_graph(amplicons, relations):
    """
    Convert pairwise relations into a graph structure.
    """
    # Create vertices (= number of unique amplicons)
    g = Graph(len(amplicons))
    g.add_edges(relations)

    amplicon_ids = [amplicon[0] for amplicon in amplicons]
    abundances = [int(amplicon[1]) for amplicon in amplicons]
    maximum = max(abundances)

    # Determine canvas size
    if len(abundances) < 500:
        bbox = (1920, 1080)
    elif len(abundances) > 4000:
        bbox = (5760, 3240)
    else:

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