INNER CODE UNIT · Python

_conf_to_pp

TimoLassmann/kalign · python-kalign/__init__.py:131

def _conf_to_pp(conf: float) -> str:
    """Convert a confidence value [0..1] to HMMER-style PP character."""
    if conf >= 0.95:
        return "*"
    return str(int(conf * 10))


def _confidence_to_pp_string(seq: str, confidences: list) -> str:
    """Convert per-residue confidence array to PP string."""
    pp = []
    for ch, conf in zip(seq, confidences):
        if ch == "-" or ch == ".":
            pp.append(".")
        else:
            pp.append(_conf_to_pp(conf))
    return "".join(pp)

View source record →