INNER CODE UNIT · Python
compare
TimoLassmann/kalign · python-kalign/__init__.py:571
def compare(reference_file: str, test_file: str) -> float:
"""
Compare two multiple sequence alignments and return SP score.
Parameters
----------
reference_file : str
Path to reference alignment file
test_file : str
Path to test alignment file
Returns
-------
float
SP score (0-100)
"""
if not os.path.exists(reference_file):
raise FileNotFoundError(f"Reference file not found: {reference_file}")