INNER CODE UNIT · Python
align_from_file
TimoLassmann/kalign · python-kalign/__init__.py:423
def align_from_file(
input_file: str,
seq_type: Union[str, int] = "auto",
gap_open: Optional[float] = None,
gap_extend: Optional[float] = None,
terminal_gap_extend: Optional[float] = None,
n_threads: Optional[int] = None,
mode: Optional[str] = None,
) -> AlignedSequences:
"""
Align sequences from a file using Kalign.
Parameters
----------
input_file : str
Path to input file (FASTA, MSF, Clustal).
seq_type : str or int, optional
Sequence type (default: "auto").