INNER CODE UNIT · Python
align_file_to_file
TimoLassmann/kalign · python-kalign/__init__.py:629
def align_file_to_file(
input_file: str,
output_file: str,
format: str = "fasta",
seq_type: Union[str, int] = "auto",
gap_open: Optional[float] = None,
gap_extend: Optional[float] = None,
terminal_gap_extend: Optional[float] = None,
n_threads: Optional[int] = None,
mode: Optional[str] = None,
) -> None:
"""
Align sequences from input file and write result to output file.
Parameters
----------
input_file : str
Path to input file