INNER CODE UNIT · Python

_write_stdout

TimoLassmann/kalign · python-kalign/cli.py:107

def _write_stdout(names: list[str], sequences: list[str], fmt: str) -> None:
    import kalign

    fmt_lower = fmt.lower()
    if fmt_lower in {"fasta", "fa"}:
        kalign.io.write_fasta(sequences, sys.stdout, ids=names)
        return

    if fmt_lower in {"clustal", "aln"}:
        kalign.io.write_clustal(sequences, sys.stdout, ids=names)
        return

    if fmt_lower in {"stockholm", "sto"}:
        kalign.io.write_stockholm(sequences, sys.stdout, ids=names)
        return

    if fmt_lower in {"phylip", "phy"}:
        kalign.io.write_phylip(sequences, sys.stdout, ids=names)

View source record →