INNER CODE UNIT · Python

run_tagtorg

timoast/sinto · sinto/cli.py:67

def run_tagtorg(options):
    tagtorg.tagtorg(
        bam=options.bam,
        tag_value_file=options.tagfile,
        tag=options.tag,
        output=options.output,
        out_format=options.outputformat,
    )


@utils.log_info
def run_blocks(options):
    blocks.blocks(
        bam=options.bam,
        block_path=options.blocks,
        min_mapq=options.min_mapq,
        nproc=options.nproc,
        cellbarcode=options.barcodetag,

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