INNER CODE UNIT · Python

run_filterbarcodes

timoast/sinto · sinto/cli.py:15

def run_filterbarcodes(options):
    """Wraps the sinto.filterbarcodes function for use on the command line
    """
    filterbarcodes.filterbarcodes(
        cells=options.cells,
        bam=options.bam,
        trim_suffix=options.trim_suffix,
        nproc=options.nproc,
        readname_barcode=options.barcode_regex,
        cellbarcode=options.barcodetag,
        outdir=options.outdir,
        sam=options.sam
    )


@utils.log_info
def run_addtags(options):
    """Wraps the sinto.addtags function for use on the command line

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