INNER CODE UNIT · Python

run_blocks

timoast/sinto · sinto/cli.py:78

def run_blocks(options):
    blocks.blocks(
        bam=options.bam,
        block_path=options.blocks,
        min_mapq=options.min_mapq,
        nproc=options.nproc,
        cellbarcode=options.barcodetag,
        umibarcode=options.umitag,
        readname_barcode=options.barcode_regex,
        cells=options.cells,
        include_strand=options.strand,
    )

@utils.log_info
def run_tagtotag(options):
    tagtotag.tagtotag(
        bam=options.bam,
        from_tag=options.from_,

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