INNER CODE UNIT · Python

run_barcode

timoast/sinto · sinto/cli.py:104

def run_barcode(options):
    addbarcodes.addbarcodes(
        cb_position=options.bases,
        fq1=options.barcode_fastq,
        fq2=options.read1,
        fq3=options.read2,
        prefix=options.prefix,
        suffix=options.suffix,
        wl=options.whitelist,
    )

@utils.log_info
def run_tagtoname(options):
    tagtoname.move(
        bam=options.bam,
        output=options.output,
        cb_tag=options.tag,
        out_format=options.outputformat,

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