INNER CODE UNIT · Python

run_addtags

timoast/sinto · sinto/cli.py:31

def run_addtags(options):
    """Wraps the sinto.addtags function for use on the command line
    """
    addtags.addtags(
        bam=options.bam,
        tagfile=options.tagfile,
        trim_suffix=options.trim_suffix,
        output=options.output,
        sam=options.sam,
        nproc=options.nproc,
        mode=options.mode,
    )


@utils.log_info
def run_fragments(options):
    """Wraps the sinto.fragments function for use on the command line
    """

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