INNER CODE UNIT · Python

default

timoast/sinto · sinto/arguments.py:343

    default=-5,
    type=int,
)
parser_fragments.add_argument(
    "--collapse_within",
    help="""
    Take cell barcode into account when collapsing duplicate fragments. Setting this
    flag means that fragments with the same coordinates can be identified provided
    they originate from a different cell barcode.
    """,
    action="store_true",
    default=False,
)
parser_fragments.set_defaults(func=cli.run_fragments)

# blocks
parser_blocks = subparsers.add_parser(
    "blocks", description="Create scRNA-seq block file from BAM file"

View source record →