INNER CODE UNIT · Python

add_barcodes

timoast/sinto · sinto/addbarcodes.py:141

def add_barcodes(f, cb):
    f_open = open_fastq(f)
    if f.endswith(".gz"):
        gz = True
        o = f.replace(".fastq.gz", "").replace(".fq.gz", "") + ".barcoded.fastq.gz"
        outfile = gzip.GzipFile(o, mode = "wb")
    else:
        gz = False
        o = f.replace(".fastq", "").replace(".fq", "") + ".barcoded.fastq"
        outfile = open(o, "w+")
    x = 0
    y = 0
    for i in f_open:
        if (x % 4 ==0):
            if gz:
                rdname = i.decode("utf-8")
            else:
                rdname = i

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