INNER CODE UNIT · Python

open_text

steineggerlab/Metabuli · util/simulate_faa_reads.py:9

def open_text(path):
    return gzip.open(path, "rt") if str(path).endswith(".gz") else open(path, "r")


def parse_fasta(path):
    name = None
    chunks = []
    with open_text(path) as handle:
        for line in handle:
            line = line.strip()
            if not line:
                continue
            if line.startswith(">"):
                if name is not None:
                    yield name, "".join(chunks)
                name = line[1:].split()[0]
                chunks = []
            else:

View source record →