INNER CODE UNIT · Python

write_blank_dmp

steineggerlab/Metabuli · util/gtdb_to_taxdump.py:304

def write_blank_dmp(outfile, outdir=None):
    if outdir is not None:
        outfile = os.path.join(outdir, outfile)
    with open(outfile, 'w') as outF:
        outF.write('#\n')
    logging.info('File written: {}'.format(outfile))
    
def main(args):
    # creating DAG
    graph = Graph()
    graph.add_vertex('root')
    for F in args.tax_file:
        logging.info('Loading: {}'.format(F))
        load_gtdb_tax(F, graph)
    # transversing DAG and writing node.dmp & names.dmp
    names_file, nodes_file = graph.write_dmp(args.outdir,
                                             embl_code=args.embl_code)
    logging.info('File written: {}'.format(names_file))

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