INNER CODE UNIT · Python

Graph

steineggerlab/Metabuli · util/gtdb_to_taxdump.py:54

class Graph(object):
    def __init__(self, graph_dict=None):
        """ initializes a graph object 
            If no dictionary or None is given, 
            an empty dictionary will be used
        """
        self.__ranks = {'d__' : 'superkingdom',
                        'p__' : 'phylum',
                        'c__' : 'class',
                        'o__' : 'order',
                        'f__' : 'family',
                        'g__' : 'genus',
                        's__' : 'species'}

        if graph_dict == None:
            graph_dict = {}
        self.__graph_dict = graph_dict
        self.__graph_nodeIDs = {}

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