INNER CODE UNIT · Python

__generate_edges

steineggerlab/Metabuli · util/gtdb_to_taxdump.py:101

    def __generate_edges(self):
        """ A static method generating the edges of the 
            graph "graph". Edges are represented as sets 
            with one (a loop back to the vertex) or two 
            vertices 
        """
        edges = []
        for vertex in self.__graph_dict:
            for neighbour in self.__graph_dict[vertex]:
                 if {neighbour, vertex} not in edges:
                    edges.append({vertex, neighbour})
        return edges

    def __str__(self):
        res = "vertices: "
        for k in self.__graph_dict.keys():
            res += str(k) + " "
        res += "\nvertex UIDs: "

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