INNER CODE UNIT · Python

coverage

StaPH-B/docker-builds · build-files/cbird-util/2.1/est_coverage.py:42

        coverage = round((int(basenum) / int(exp_gs)),2)
        coverage_trim = round((int(basenum_trim) / int(exp_gs)),2)
    except ValueError:
        print("Someting wrong in coverage calculation")
    finally:
        with open("COVERAGE", "w") as cov:
            cov.write(str(coverage))
        with open("COVERAGE_TRIM", "w") as cov2:
            cov2.write(str(coverage_trim)) 

    try:                
        ratio = round((int(genome_length) / int(exp_gs)),2)
    except ValueError:
        print("Someting wrong in genome ratio calculation")
    finally:
        with open("GENOME_RATIO", "w") as r:
            r.write(str(ratio))
        

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