INNER CODE UNIT · Python

main

StaPH-B/docker-builds · build-files/cbird-util/2.0/qc_report.py:13

def main(args):
    samplename = args.samplename
    fastp_report = args.fastp_report
    bracken_report = args.bracken_report
    quast_report = args.quast_report
    checkm2_report = args.checkm2_report
    version = args.version
    phiX_ratio = args.phiX_ratio
    sequencing_depth = args.sequencing_depth
    genome_ratio = args.genome_ratio

    # get sequencing depth & genome ratio
    with open(sequencing_depth) as f:
        seq_depth = f.read()

    with open(genome_ratio) as f:
        gen_ratio = f.read()

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