INNER CODE UNIT · Python

extended_report

StaPH-B/docker-builds · build-files/cbird-util/2.0/html_report.py:210

def extended_report(samplename, bracken, mlst, amr, point, stress, virulence, plasmid, blast, mash, version):
    page_title = samplename
    title = "Whole Genome Sequencing Analysis Report"
    stitle1 = "Sample Information"
    stitle2 = "Taxonomic Profile of Reads"
    stitle3 = "Predicted Organism"
    stitle4 = "MLST Typing"
    stitle5 = "Resistance Genes"
    stitle6 = "Point Mutations"
    stitle7 = "Stress Genes"
    stitle8 = "Hypervirulance Genes"
    stitle9 = "Target Gene Search"
    stitle10 = "Plasmids Detected"    
    today = date.today()
    footer = "Research use only."
    
    # HTML #
    html = f'''

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