INNER CODE UNIT · Python
speedup_mf
sstadick/perbase · paper/plot_benchmarks_simple.py:61
speedup_mf = sambamba_mf / perbase_mf
# Save plot
plt.savefig(output_dir / "benchmark_comparison.png", dpi=300, bbox_inches="tight")
plt.savefig(output_dir / "benchmark_comparison.pdf", bbox_inches="tight")
print("Plot generated successfully!")
print(f"Standard mode: perbase is {speedup_std:.1f}x faster than sambamba")
print(f"Mate-fix mode: perbase is {speedup_mf:.1f}x faster than sambamba")