INNER CODE UNIT · Python
speedup_std
sstadick/perbase · paper/plot_benchmarks_comprehensive.py:145
speedup_std = sambamba_std / perbase_std
speedup_mf = sambamba_mf / best_mate_fix_runtime
print("Plots generated successfully!")
print("\nPerformance Summary:")
print(f"Standard mode:")
print(f" perbase: {perbase_std:.1f} minutes")
print(f" sambamba: {sambamba_std:.1f} minutes")
print(f" Speedup: {speedup_std:.1f}x faster")
print(f"\nMate-fix mode (best method: {best_mate_fix_method}):")
print(f" perbase: {best_mate_fix_runtime:.1f} minutes")
print(f" sambamba: {sambamba_mf:.1f} minutes")
print(f" Speedup: {speedup_mf:.1f}x faster")
print(f"\nAll mate-fix methods performance:")
for method, runtime in zip(sorted_methods, sorted_runtimes):
print(f" {method}: {runtime:.1f} minutes")