INNER CODE UNIT · Python

vst_transform

scverse/PyDESeq2 · src/pydeseq2/dds.py:395

    def vst_transform(self, counts: np.ndarray | None = None) -> np.ndarray:
        """Apply the variance stabilizing transformation.

        Uses the results from the ``vst_fit`` method.

        Parameters
        ----------
        counts
            Counts to transform.
            If ``None``, use the counts from the current dataset. (default: ``None``).

        Returns
        -------
        Variance stabilized counts.

        Raises
        ------
        RuntimeError

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