INNER CODE UNIT · Python

beta_tol

scverse/PyDESeq2 · src/pydeseq2/dds.py:182

        beta_tol: float = 1e-8,
        n_cpus: int | None = None,
        inference: Inference | None = None,
        quiet: bool = False,
        low_memory: bool = False,
    ) -> None:
        # Initialize the AnnData part
        if adata is not None:
            if counts is not None:
                warnings.warn(
                    "adata was provided; ignoring counts.", UserWarning, stacklevel=2
                )
            if metadata is not None:
                warnings.warn(
                    "adata was provided; ignoring metadata.", UserWarning, stacklevel=2
                )
            # Test counts before going further
            adata_counts = cast(np.ndarray, adata.X)

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