INNER CODE UNIT · Java

BLAST

sanger-pathogens/Artemis · etc/setup_blast_dbs.sh:13

	BLAST=/usr/local/ncbi/blast/bin/makeblastdb
fi

if [ ! -x "$BLAST" ]
then
	echo "ERROR: Unable to locate makeblastdb program. Exiting."
	echo "Please ensure that this is available from /usr/local/ncbi/blast/bin"
	echo "OR has been added to your PATH environment variable." 
	exit 1
fi

export BLAST

echo "Installing blast databases to $HOME/blast-data..."

INSTALL_AREA=$HOME/blast-data
cd $HOME
mkdir -p $INSTALL_AREA

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