INNER CODE UNIT · C++

prof_sol

refresh-bio/FAMSA · src/msa.cpp:391

					prof_sol = new CProfile(*gs, &params);
				}
				else
				{
					// Internal refinement
					if (prof1->Size() + prof2->Size() > ref_thr)
					{
						if (prof1->Size() <= ref_thr && prof1->Size() > 2)
							RefineAlignment(prof1, no_threads);
						if (prof2->Size() <= ref_thr && prof2->Size() > 2)
							RefineAlignment(prof2, no_threads);
					}

					prof_sol = new CProfile(prof1, prof2, &params, no_threads, no_rows_per_box, &atp);

					delete prof1;
					delete prof2;
				}

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