INNER CODE UNIT · C++

dups

refresh-bio/FAMSA · src/msa.cpp:545

			dups = sequences.size() - mapped_seqs.size();
			LOG_VERBOSE << mapped_seqs.size() << "/" << sequences.size() << " sequences retained." << endl;
		}

		// only one unique sequence - move input to output end exit
		if (mapped_seqs.size() == 1) {
			final_profile = new CProfile(&params);
			for (int i = 0; i < (int)sequences.size(); ++i) {
				final_profile->AppendRawSequence(CGappedSequence(move(sequences[i])));
			}
			return true;
		}

		// store mappings and temporarily reset numerical identifiers (to make medoid trees work)
		for (int i = 0; i < (int)mapped_seqs.size(); ++i) {
			mapped_seqs[i]->sequence_no = i;
		}
		

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