INNER CODE UNIT · Python

machine

pybel/pybel · src/pybel/cli.py:384

def machine(manager: Manager, agents: list[str], local: bool, host: str):
    """Get content from the INDRA machine and upload to BEL Commons."""
    from indra.sources import indra_db_rest

    from pybel import from_indra_statements

    statements = indra_db_rest.get_statements(agents=agents)
    click.echo(f"got {len(statements)} statements from INDRA")

    graph = from_indra_statements(
        statements,
        name="INDRA Machine for {}".format(", ".join(sorted(agents))),
        version=time.strftime("%Y%m%d"),
    )
    click.echo(f"built BEL graph with {graph.number_of_nodes()} nodes and {graph.number_of_edges()} edges")

    if 0 == len(graph):
        click.echo("not uploading empty graph")

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