INNER CODE UNIT · Python

AmrFinderPlusIterator

pha4ge/hAMRonization · hAMRonization/AmrFinderPlusIO.py:20

class AmrFinderPlusIterator(hAMRonizedResultIterator):

    nuc_field_map = {
        "Protein id": None,
        "Contig id": "input_sequence_id",
        "Start": "input_gene_start",
        "Stop": "input_gene_stop",
        "Strand": "strand_orientation",
        "Element symbol": "gene_symbol",
        "Element name": "gene_name",
        "Scope": None,
        "Type": None,
        "Subtype": None,
        "Class": "drug_class",
        "Subclass": "antimicrobial_agent",
        "Method": None,
        "Target length": "input_gene_length",
        "Reference sequence length": "reference_gene_length",

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