INNER CODE UNIT · Python

frac_mapped

open2c/bioframe · src/bioframe/extras.py:220

def frac_mapped(df, fasta_records, return_input=True):
    """
    Calculate the fraction of mapped base-pairs for each interval in a dataframe.

    Parameters
    ----------
    df : pandas.DataFrame
        A sets of genomic intervals stored as a DataFrame.

    fasta_records : OrderedDict
        Dictionary of chromosome names to sequence records.
        Created by: bioframe.load_fasta('/path/to/fasta.fa')

    return_input: bool
        if False, only return Series named frac_mapped.

    Returns
    -------

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