INNER CODE UNIT · Python

frac_gene_coverage

open2c/bioframe · src/bioframe/extras.py:357

def frac_gene_coverage(df, ucsc_mrna):
    """
    Calculate number and fraction of overlaps by predicted and verified
    RNA isoforms for a set of intervals stored in a dataframe.

    Parameters
    ----------
    df : pd.DataFrame
        Set of genomic intervals stored as a dataframe.

    ucsc_mrna: str or DataFrame
        Name of UCSC genome or all_mrna.txt dataframe from UCSC or similar.

    Returns
    -------
    df_gene_coverage : pd.DataFrame

    """

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