INNER CODE UNIT · Python

ValidateFastaAlignment

nickjcroucher/gubbins · python/gubbins/ValidateFastaAlignment.py:13

class ValidateFastaAlignment(object):

    def __init__(self, input_filename):
      self.input_filename = input_filename

    def is_input_fasta_file_valid(self):
      try:
          if not self.does_each_sequence_have_the_same_length():
              print("Each sequence must be the same length")
              return False
          if not self.are_sequence_names_unique():
              print("All sequence names in the fasta file must be unique")
              return False
          if not self.does_each_sequence_have_a_name_and_genomic_data():
              print("Each sequence must have a name and some genomic data")
              return False
      except:
          return False

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