INNER CODE UNIT · Python

set_up_pipeline_files

nf-core/tools · nf_core/components/lint/__init__.py:199

    def set_up_pipeline_files(self):
        self.load_lint_config()
        self.modules_json = ModulesJson(self.directory)
        self.modules_json.load()

        # Only continue if a lint config has been loaded
        if self.lint_config:
            for test_name in self.lint_tests:
                if self.lint_config.get(test_name, {}) is False:
                    log.info(f"Ignoring lint test: {test_name}")
                    self.lint_tests.remove(test_name)

    def filter_tests_by_key(self, key):
        """Filters the tests by the supplied key"""
        # Check that supplied test keys exist
        bad_keys = [k for k in key if k not in self.lint_tests]
        if len(bad_keys) > 0:
            raise AssertionError(

View source record →