INNER CODE UNIT · Python

ReferenceSequence

mlin/GenomicSQLite · bindings/python/genomicsqlite/__init__.py:151

class ReferenceSequence(NamedTuple):
    rid: int
    name: str
    length: int
    assembly: Optional[str]
    refget_id: Optional[str]
    meta: Dict[str, Any]


def get_reference_sequences_by_rid(
    con: sqlite3.Connection, assembly: Optional[str] = None, schema: Optional[str] = None
) -> Dict[int, ReferenceSequence]:
    table = "_gri_refseq"
    if schema:
        table = f"{schema}.{table}"
    sql = (
        "SELECT _gri_rid, gri_refseq_name, gri_refseq_length, gri_assembly, gri_refget_id, gri_refseq_meta_json FROM "
        + table

View source record →