INNER CODE UNIT · Rust

run

mbhall88/rasusa · src/alignment/mod.rs:30

    fn run(&mut self) -> Result<()> {
        match self.strategy {
            SubsamplingStrategy::Stream => self.run_stream(),
            SubsamplingStrategy::Fetch => self.run_fetch(),
        }
    }
}

impl Alignment {
    // a function which infers data type (paired and or single end) by looking at the first 10 records
    fn check_pair(&self) -> Result<bool> {
        // set up reader. Only the first 10 records are read below, so multithreaded BGZF
        // decoding would pay worker-pool spin-up costs for no benefit - always use 1 thread here.
        let mut reader = build_alignment_reader(&self.aln, NonZeroUsize::new(1).unwrap())?;

        let header = reader.read_header()?;

        // read records only to check what type of the data

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