INNER CODE UNIT · Rust

bam_with_no_start_or_end_regions_and_missing_chromosomes

mbhall88/rasusa · src/alignment/mod.rs:202

    fn bam_with_no_start_or_end_regions_and_missing_chromosomes() {
        let infile = "tests/cases/no_start_end.bam";
        let passed_args = vec![SUB, infile, "-c", "1"];
        let mut cmd = Command::cargo_bin(env!("CARGO_PKG_NAME")).unwrap();

        cmd.args(passed_args).assert().success();
    }

    #[test]
    fn bam_is_not_sorted_fails() {
        let infile = "tests/cases/test_not_sorted.bam";
        let passed_args = vec![SUB, infile, "-c", "1"];
        let mut cmd = Command::cargo_bin(env!("CARGO_PKG_NAME")).unwrap();

        cmd.args(passed_args).assert().failure();
    }

    // helper function to run subsamping aln and get the resulted read names

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